Ichthyology (Bio 261) Laboratory Instructions 

                Fish taxonomy and ecology can be challenging fields of study, as fish are often not readily observable and most people have limited exposure to the wide diversity of fishes around them (this is in contrast to the flying reptiles which are everywhere and often a nuisance).  Yet, being the ancestral group to all other vertebrates coupled with the sheer taxonomic diversity within the fishes makes these creatures a joy and wonder to study.
                The laboratory section of this course will focus primarily on learning to identify by sight some of the common fish families (41) and species (42) in California.  You will also learn to use a dichotomous key to identify unknown fishes.  The majority of lab time we will be learning to identify fishes and make drawings/sketches of particular families (41 in all).   Additionally, you will examine the ecology of the fishes under study and you will learn to draw inferences about a fish’s diet, predator avoidance, habitat, etc. based on its external morphology.  Therefore a significant portion of your in-lab time will be spent creating a Lab Notebook that you will turn in for a grade.  These notebooks will follow a particular format that I will give you.
                I’ve included a blank laboratory notebook sheet in this packet.  Please make your own photocopies to use in your notebook (sorry, budget constraints prohibits me from doing this for everyone).  Notebooks must be three-ring binders.  You are required to complete one sheet for each of the Families listed below.  You probably should not spend more than 15 minutes on each sheet.

I am not looking for works of art, just large sketches that are recognizable and labeled with the identifying characteristics (dichotomous key traits) for that taxa.  Drawings must be done from actual specimens, not books.  You should think of the notebook as your personal study tool and treat it as such, adding any information that will help you remember the organisms.
               
The “Ecological notes” section should be used to answer, based on your observation of the morphology of the organism, the following questions:
               1) What type of food do these fish likely eat and why?
                2) How does this fish likely capture its food? (how does it feed)
                3) What type of habitat would you likely find this fish? (be more specific than "the water" :-)
                4) How does this fish avoid predators?
                5) What other interesting information can be inferred about this fish's ecology from its morphology?
Not all of the answers to these questions may be readily apparent from the morphology, but most of them will.  You are encouraged to infer as much as you can about the ecology of the fishes we study and will not be penalized for wrong (but reasonable) guesses.
                I have provided an example of the type of work I expect.  I will happily look at your notebook anytime throughout the semester and give you feedback on it, usually by the next day.  Notebooks must be neat, legible, complete and the pages numbered (sloppy, illegible and incomplete notebooks will receive low grades). There is no reason that anyone who wants to get 100% on their notebook should not succeed.  Notebooks will be collected for grading during the last regular week of the semester. 

CARE OF FISH SPECIMENS
The majority of the fish you will examine in lab will come from the Chico State Fish Museum.  As such they are not easily replacable and need to be handled with care.  The museum is a teaching museum but each jar is cataloged and identified so that other researchers can use and access the data we have on the our fish collection.  You Must Follow the Guidelines

Fish Families For Which You Need To Have Drawings
 (Listed in the order they should appear in your notebook,)

  1. Myxinidae (hagfishes)                                                                                                                                       
  2. Petromyzontidae (lampreys)                                                                              
  3. Triakidae (hound sharks)                                                                                   
  4. Carcharhinidae (requiem and hammerhead sharks)                                                                       
  5. Squalidae (dogfish sharks)                                                                                
  6. Rajidae (skates)                                                                                                   
  7. Myliobatidae (eagle rays)                                                                                  
  8. Chimaeridae (ratfishes)      
  9. Amiidae (Amia calva)                                                                        
  10. Acipenseridae (sturgeons)                                                                                
  11. Lepisosteidae (gars)                                                                                           
  12. Clupeidae (herrings)                                                                                           
  13. Engraulidae (anchovies)                                                                                    
  14. Esocidae (pike)                                                                                                    
  15. Salmonidae (salmon, trout, and whitefish)                                                      
  16. Aphredoderidae (pitrate perch)                                                                        
  17. Osmeridae (smelts)                                                                                             
  18. Cyprinidae (minnows)                                                                                        
  19. Catostomidae (suckers)                                                                                     
  20. Ictaluridae (catfishes)                                                                                         
  21. Hemiraphidae (halfbeaks)                                                                                  
  22. Cyprinodontidae (pupfishes)                                                                            
  23. Poeciliidae (livebearers)                                                                                     
  24. Atherinidae (silversides)                                                                                   
  25. Gasterosteidae (sticklebacks)                                                                           
  26. Syngnathidae (tubesnouts and seahorses)                                                    
  27. Scorpaenidae (rockfishes)                                                                                 
  28. Hexagrammidae (greenlings)                                                                             
  29. Cottidae (sculpins)                                                                                             
  30. Moronidae (temperate basses)                                                                         
  31. Centrarchidae (sunfishes and warmwater basses)                                        
  32. Percidae (perches and darters)                                                                         
  33. Echeneidae (remoras)                                                                                         
  34. Embiotocidae (surfperches)                                                                              
  35. Cichlidae (cichlids)                                                                                             
  36. Pholididae (gunnels)                                                                                          
  37. Gobiesocidae (clingfish)                                                                                    
  38. Gobiidae (gobies)                                                                                                
  39. Bothidae (lefteye flounders)                                                                             
  40. Pleuronectidae (righteye flounders)                                                                
  41. Cynoglossidae (tonguefish) 
Species you need to be able to identify by common name  (extra points for knowing latin names)
Feb 9 families: Myxinidae, Petromyzontidae, Triakidae, Gasterosteidae, Syngnathidae, Embiotocidae, Atherinidae
  1. threespine stickleback (Gasterosteus aculeatus),
  2. bay pipefish (Syngnathus leptorhynchus),
  3. shiner surfperch (Cymatogaster aggregata),
  4. dwarf surfperch (Micrometrus minimus),
  5. walleye surfperch (Hyperprosopon argenteum)
  6. inland silverside (Menidia beryllina) 

Feb 16 families: Carcharhinidae, Squalidae, Rajidae, Myliobatidae, Chimaeridae, Clupeidae, Acipenseridae, Salmonidae

  1. white sturgeon (Acipencer transmontanus)
  2. american shad (Alosa sapidissima)*
  3. threadfin shad (Dorosoma pentenese)*
  4. mountain whitefish (Prosopium williamsoni)
  5. rainbow trout (Oncorhynchus mykiss),
  6. brown trout (Salmo trutta)*
  7. brook trout (Salvelinus fontinalis)* 

Feb 23 families: Amiidae, Lepiosteidae, Engraulidae, Esocidae, Aphredoderidae, Centrarchidae

  1. black crappie (Pomoxis nigromaculatus)*
  2. largemouth bass (Micropterus salmoides)*
  3. smallmouth bass (Micropterus dolomieui)*
  4. bluegill (Lepomis macrochirus)*
  5. green sunfish (Lepomis cyanellus) *
  6. Sacramento perch (Archoplites interruptus).

March 8 Lab Practical I
March 22 families: Osmeridae, Cyprinidae, Catostomidae, Hemiramphidae, Cyprinidontidae

  1. Sacramento blackfish (Orthodon microlepidotus),
  2. Sacramento pikeminnow (Ptychocheilus grandis),
  3. hardhead (Mylopharodon concephalus),
  4. hitch (Lavinia exilicauda),
  5. California roach (Lavinia symmetricus).
  6. tui chub (Gila bicolor)
  7. common carp (Cyprinus carpio)*
  8. fathead minnow (Pimephales promelas)* 

March 29 families: Ictaluridae, Scorpaenidae, Hexagrammidae, Cottidae, Moronidae, Percidae, Echeneidae

  1. channel catfish (Ictalurus punctatus)*
  2. black bullhead (Ameirus melas)*
  3. striped bass (Morone saxatilis)*
  4. prickly sculpin (Cottus asper)
  5. riffle sculpin (Cottus gulosus)
  6. Sacramento sucker (Catostomus occidentalis)
  7. Tahoe sucker (Catostomus tahoensis)
  8. speckled dace (Rhinichthys osculus)
  9. Lahontan redside (Richarsonius egregius) 

April 5 families: Poeciliidae, Cichlidae, Pholididae, Gobiesocidae, Gobiidae, Bothidae, Pleuronectidae, Cynoglossidae

  1. western mosquito fish (Gambusia affinis)*
  2. tule perch (Hysterocarpus traski),
  3. yellowfin goby (Acanthogobius flavimanus),
  4. shimofuri goby (Tridentiger bifasciatus),
  5. longjaw mudsucker (Gillichthys mirabilis),
  6. starry flounder (Platichthys stellatus). 

April 12 Lab Practical II (COMPREHENSIVE)

Using Morphology to Infer Ecology
(Bring this with you to lab and refer to it!!)

                You might initially think that since we don’t directly observe organisms in their natural habitat in this class, (i.e. we pull them out of their habitat and bring them to the laboratory) that we are somehow prevented from learning much about their ecology.  This is not completely true.  We do have a lot of external cues (morphological features) we can use to infer aspects of their ecology and natural history (where they live, what they eat, how they avoid predators etc.).
               
We do this sort of thing every day in our own lives.  For example, if you saw a gentleman downtown wearing sandals, dark socks, bermuda shorts, a funny hat and he was snapping pictures every five minutes, you might infer that he was a tourist checking out the sights of Chico.  You may be wrong, (he might have been your instructor doing some field work), but chances are that you would be correct roughly 80% of the time.
               
This is what I am asking you to do in the lab portion of this class.  Be an astute observer, look closely at the organisms and think about how different structures and morphology may enable or constrain the animal.  I don’t expect you to get everything correct all the time, but with a little logical thinking, you should be able to infer quite a bit regarding these organisms’ ecology.  This handout explains how the body form, size, mouth, sense organs, coloration, and protective organs can be used to make inferences about how particular fish “make a living.”
                Throughout the semester also try to think of how some of these morphological features can interact with each other (i.e. the color of small organisms etc.) 

1) Body form - What does the organism look like?
a) Rover-predator:  This is the classical fish shape with the thickest part of the fish about 1/3 of the way down the body.  This shape reduces drag and is designed for cruising and pursuing active prey.  It is also effective for holding position in fast-moving streams.  Examples:  tunas, trout.
b) Lie-in-wait predator:  These fish are elongate and have large dorsal, anal, and caudal fins placed far back on the body.  This arrangement results in a lot of drag and poor sustained swimming but gives the fish excellent acceleration for ambushing prey.  Example:  pike.
c) Surface-oriented fish:  These fish feed primarily on insects living at or near the surface of the water.  The head is usually flattened dorso-ventrally and the mouth is supraterminal.  Such fish are usually small and have the dorsal fin placed far back on the body.  Examples:  mosquitofish, mollies.
d) Bottom rover:  These fish are adapted for feeding at or near the bottom.  The mouth is often subterminal, the pectoral fins usually large and rigid, the head is sometimes dorso-ventrally flattened, and the dorsal fin short and upright.  This morphology uses the water current to keep the fish pressed down against the bottom.  Examples: catfishes, suckers, sculpins.
e) Bottom clinger:  These fish often have pelvic fins that are modified into a sucking organ to assist in maintaining position in fast or turbulent water.  Example: gobies.
f) Deep-bodied fish:  This body type is designed for maneuverability.  The pectoral fins are large and high up on the body, with the pelvic fins immediately below.  The body is laterally compressed, with the depth up to 1/2 the body length.  Fish of this type are usually associated with some type of cover.  Their large, bulging eyes give them binocular vision, which makes them adept at locating and “picking” their prey items.  Examples:  bluegill, surfperches.

 The flounders are a group of fishes, which have adapted this body form to a bottom-living lifestyle.  The lateral compression allows them to effectively hide on the bottom, making them good ambush predators.  Example: halibut.

Planktivores, which are usually high in the water column and away from cover also use a laterally compressed or deep body form, coupled with sharp ventral keels and silvery scales to reduce their visibility from below.  Example: herring.

g) Eel-like fish:  These fishes have reduced or absent pectoral and pelvic fins and the dorsal and anal fins are sometimes fused to the caudal fin.  In extreme cases the operculum, maxilla, and other protruding parts are absent.  This body type makes them able to hide in reefs, rock piles, etc. without getting snagged.  Example: moray eel. 

2) Size -How big is the critter?
Size does matter to an organism, especially if the organism happens to live in water.  Large aquatic organisms are confined to certain types of aquatic habitat (think of trying to fit a 5m sturgeon into Little Chico Creek?!).  The large size places constraints on them physically, (how do they get food, oxygen, mates etc.) which in turn constrains where they live and what they do (i.e. their ecology).  Small sizes also place constraints on organisms, especially when they are very small.  It is always important to put the scale on your drawings.

3) Mouth -How does it get its food?
Mouth size is usually a good indicator of prey size (expect in filter-feeding planktivores, which have exceptionally large mouths and eat exceptionally small prey).  Supraterminal and subterminal mouths characterize surface- and bottom-feeders, respectively.  Piscivores usually have sharp teeth (which may be backward pointing and found on the roof of the mouth and on the tongue) as well as hard mouths.  Suction feeders have very protrusible mouths and small teeth.

4) Sense organs -How does it find its way around?
Many bottom feeders have sense organs, which allow them to find food in dark or turbid water (barbels, photophores, ampullae of lorenzini etc.).  Bottom feeding organisms or ones that live in dark environments may also have small eyes.  The largest eyes are found on active predators that feed at dawn or dusk, or live in deep water where light is limited.  Some fish have a lateral line (often visible) down each side of the body to help sense pressure changes in the water.  Some fish don’t have true eyes.  How would this help or hinder them?  Would it depend on their lifestyle?

5)  Coloration -How does it hide or blend in to its environment?
A common coloration pattern in fishes is countershading; this is having a dark dorsal surface (to blend in with the bottom or dark water below when viewed from above) and a light ventral surface (to blend in with the light water when viewed from below). Pelagic fishes tend to be silvery or white, with or without countershading.  Bottom dwelling fish usually have mottled coloration on their dorsum to blend in with the substrate, and fish living near vegetation typically have vertical bars or other disruptive patterns to allow them to blend into the vegetation better. Territorial or inedible (poisonous) fish may be brightly colored.   Very small fish often tend to be clear and nearly invisible to avoid detection.  Some fish (generally deep sea fishes) have light producing organs (photophores) on their body.  These are thought to attract prey in the blackness of the deep sea. 

6)  Protective Organs -How does it avoid getting eaten?
a) Bony or Hard plates:  These are usually hard enough that a predator must either be able to bite through the armor in order to hold the prey, or the predator must be swift and accurate enough to catch the prey by an unarmored portion of the body such as the tail.  Does this tell you something about how or where it might live?
b)  Spines or spine-like rays: Spines increase the “effective size” of the organism, thus reducing the number of potential predators.  For example, if I had foot long spines projecting from my chest, back and sides, it would make me much more difficult for a lion or polar bear to eat.  This defense is found most commonly on slow fish that cannot use speed to elude predators.  Also, some fish have toxins in their spines.
c)  Deciduous body scales:  Some fish  have scales that shed easily in flight to confuse predators and fall off when the organism is bitten, making them hard to grasp (e.g. herring have scales that fall off easily) 

7. Scales
Fishes that live in flowing water (e.g. trout) or swim continuously (e.g. tuna) tend to have many small scales or no scales at all.  In contrast, fishes that live in slow moving water and do not swim continuously (e.g. carp, bluegill) typically have large, coarse scales that offer more protection.  There are three main types of scales:

a) Placiod scales:  These tooth-like scales give some fishes (e.g. sharks) a rough, protective skin and may serve to improve hydrodynamic efficiency by reducing drag.  Many skates and rays are not covered by placoid scales except as patches of bony armor or as spines
b) Ganoid scales:  These are made of ganoine (“enamel”), are rectangular, heavy, armor-like, and found on ancestral-type fishes such as gars.
c) Body ridge scales:  These teleost scales are of two types
                i)  Cycloid scales:  These are round, flat, and thin and are found on more ancestral teleost fishes such as trout and minnows.  The rings (annuli) on these scales can be used to age some fishes.
                ii)  Ctenoid scales:  These are found on derived teleosts and are similar to cycloid  scales except that they have tiny comb-like projections (ctenii) on the posterior edge.  They are thought to improve hydrodynamic efficiency.  These scales can also be used to age fishes.

 

8. Fins
a)  Pelvic fins:  These are some of the most variable fins.  Fishes with pelvic fins located far back on the body (abdominal) are usually rover predators that use them as stabilizers.  In maneuverable deep-bodied fishes the pelvic fins are below the pectoral fins (thoracic) or in front of them (jugular).  In some crevice-dwelling fishes the pelvic fins are reduced or absent and in bottom clingers they can be modified into sucking organs.
b)  Pectoral fins:  Generally speaking, the higher up on the body, the more maneuverable the fish.  Also, they tend to be long and pointed on the less active fishes.  Fishes that live on the bottom (e.g. sculpins) may have large, fan-like pectoral fins to help them brace between rocks.
c)  Dorsal and anal fins:  These are usually long on roving or deep-bodied fishes to increase swimming stability.  Surface- and bottom-feeders often have shorter dorsal and anal fins.
d)  Caudal fin:  The more active the fish is, the deeper the fork will be in the caudal fin.  This significantly reduces drag, but at the expense of maneuverability and acceleration.

9. Gill rakers
Go ahead, take a gander at the gill rakers (just be careful to not break the operculum) Gill rakers serve two functions.  They protect the delicate gills from swallowed objects and also work like a sieve to prevent food particles in the buccal cavity from escaping out through the gill openings.  Thus, they can give clues as to the feeding habits of fishes.  Filter-feeding planktivores have long, fine, closely spaced gill rakers that act as a sieve or strainer.  Insect-eating and omnivorous fishes tend to have rakers of moderate length and spacing.  A fish specializing on hard-shelled prey, such as snails, will have short, stout gill rakers, used to help crush the shells.

 


BIOL 261 Ichthyology - Laboratory Notebook

 

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Scale of Drawing: ________________ 

Identifying Characteristics:________________________________________________________________

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Ecological Notes:________________________________________________________________________

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Example of lab notebook page